PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G047300.1
Common NameB456_001G047300, LOC105784269
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 248aa    MW: 27426.9 Da    PI: 8.4509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G047300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-1070121154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ a +e+Er RR+++ + +++Lr+llP+ +    ++K   ++   +Av+YI ++
  Gorai.001G047300.1  70 KKIARKEIERERRQQMGKLYQKLRSLLPPeS---IKGKRAASDHMNEAVNYITYM 121
                         577899***********************66...9*****************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1167134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.0369121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-870124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-670125No hitNo description
PfamPF000109.2E-871121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.008675127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFPSDQIDDY LYEISDIPHH EDFVRQNLTS GESVEGSHLT RRTGKGRGLK SLAVANNNDA  60
NYAVSANDAK KIARKEIERE RRQQMGKLYQ KLRSLLPPES IKGKRAASDH MNEAVNYITY  120
MKKRIGELSI KRDKVKKLSN RSALDLGSSS ASSSGINSCV VVHPFRGGVE IMISSGFGDQ  180
SWHLSTVLQA ILEEGLDVVR CVSSQTIEGL LHTVQSEVTD PTQIDLSRLQ TKLNDLISYY  240
DNAGCGR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465591.10.0PREDICTED: transcription factor bHLH118-like
TrEMBLA0A0D2PLW00.0A0A0D2PLW0_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17143711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.14e-26bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]